Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDP27401.1 | SDP27430.1 | SAMN05216565_102155 | SAMN05216565_102156 | RNA-binding protein YlmH, contains S4-like domain. | YggT family protein. | 0.889 |
| SDP27401.1 | mrnC | SAMN05216565_102155 | SAMN05216565_11667 | RNA-binding protein YlmH, contains S4-like domain. | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.773 |
| SDP27401.1 | prfB | SAMN05216565_102155 | SAMN05216565_110131 | RNA-binding protein YlmH, contains S4-like domain. | Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.810 |
| SDP27401.1 | rplI | SAMN05216565_102155 | SAMN05216565_104337 | RNA-binding protein YlmH, contains S4-like domain. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.781 |
| SDP27401.1 | rplS | SAMN05216565_102155 | SAMN05216565_102101 | RNA-binding protein YlmH, contains S4-like domain. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.747 |
| SDP27401.1 | rplU | SAMN05216565_102155 | SAMN05216565_1013 | RNA-binding protein YlmH, contains S4-like domain. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.745 |
| SDP27401.1 | rpmF | SAMN05216565_102155 | SAMN05216565_102187 | RNA-binding protein YlmH, contains S4-like domain. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.745 |
| SDP27401.1 | rpmG | SAMN05216565_102155 | SAMN05216565_106169 | RNA-binding protein YlmH, contains S4-like domain. | LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family. | 0.790 |
| SDP27401.1 | rsfS | SAMN05216565_102155 | SAMN05216565_10690 | RNA-binding protein YlmH, contains S4-like domain. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.768 |
| SDP27401.1 | sepF | SAMN05216565_102155 | SAMN05216565_102157 | RNA-binding protein YlmH, contains S4-like domain. | Cell division inhibitor SepF; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.873 |
| SDP27430.1 | SDP27401.1 | SAMN05216565_102156 | SAMN05216565_102155 | YggT family protein. | RNA-binding protein YlmH, contains S4-like domain. | 0.889 |
| SDP27430.1 | sepF | SAMN05216565_102156 | SAMN05216565_102157 | YggT family protein. | Cell division inhibitor SepF; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.966 |
| mrnC | SDP27401.1 | SAMN05216565_11667 | SAMN05216565_102155 | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | RNA-binding protein YlmH, contains S4-like domain. | 0.773 |
| mrnC | rplS | SAMN05216565_11667 | SAMN05216565_102101 | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.708 |
| mrnC | rplU | SAMN05216565_11667 | SAMN05216565_1013 | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.737 |
| mrnC | rpmF | SAMN05216565_11667 | SAMN05216565_102187 | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.705 |
| mrnC | rpmG | SAMN05216565_11667 | SAMN05216565_106169 | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family. | 0.738 |
| mrnC | sepF | SAMN05216565_11667 | SAMN05216565_102157 | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | Cell division inhibitor SepF; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.587 |
| prfB | SDP27401.1 | SAMN05216565_110131 | SAMN05216565_102155 | Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | RNA-binding protein YlmH, contains S4-like domain. | 0.810 |
| prfB | rplI | SAMN05216565_110131 | SAMN05216565_104337 | Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.970 |
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