STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iclRPutative IclR-family regulatory protein. (263 aa)    
Predicted Functional Partners:
B5T_00740
Urea amidolyase.
  
    0.875
pcaR
Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family.
  
     0.737
B5T_00205
Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family.
  
     0.726
B5T_03996
Putative IclR family transcriptional regulatory protein.
  
     0.720
B5T_00373
Mhp operon transcriptional activator.
  
     0.663
B5T_01672
Putative transcriptional regulator.
  
     0.628
phaD
Transcriptional regulator, TetR family protein.
 
   
 0.621
B5T_01633
IclR helix-turn-helix domain family.
  
     0.607
B5T_00044
Succinyl-CoA:3-ketoacid-coenzyme A transferase 1; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.
  
  
 0.494
uahA
Urea amidolyase related protein.
  
    0.450
Your Current Organism:
Alcanivorax dieselolei
NCBI taxonomy Id: 930169
Other names: A. dieselolei B5, Alcanivorax dieselolei B5, Alcanivorax dieselolei str. B5, Alcanivorax dieselolei strain B5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.