STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
nfuAFe/S biogenesis protein nfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. (197 aa)    
Predicted Functional Partners:
iscS
Aminotransferase, class V superfamily.
  
 
 0.981
djlA
DnaJ-like protein DjlA; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host.
  
 
 0.934
sdhB
Succinate dehydrogenase and fumarate reductase iron-sulfur protein.
  
 
 0.929
ydhD
Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
  
 0.812
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.803
B5T_00825
Phenylacetic acid degradation oxidoreductase PaaK.
  
 
 0.712
B5T_01453
Oxidoreductase FAD-binding subunit.
  
 
 0.712
B5T_01493
Vanillate O-demethylase oxidoreductase.
  
 
 0.712
B5T_01808
Hypothetical protein.
  
     0.711
aapB
Iron-regulated ABC transporter ATPase subunit SufC.
  
 
 0.706
Your Current Organism:
Alcanivorax dieselolei
NCBI taxonomy Id: 930169
Other names: A. dieselolei B5, Alcanivorax dieselolei B5, Alcanivorax dieselolei str. B5, Alcanivorax dieselolei strain B5
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