STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
B5T_02862Putative galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (320 aa)    
Predicted Functional Partners:
B5T_02863
TRAP-T family transporter.
       0.608
B5T_00044
Succinyl-CoA:3-ketoacid-coenzyme A transferase 1; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.
  
  
 0.555
B5T_02865
Aldehyde dehydrogenase.
     
 0.471
B5T_02864
TRAP transporter, 4TM/12TM fusion protein.
       0.453
B5T_00246
Amidohydrolase subfamily.
 
   
 0.439
B5T_02861
UbiD family decarboxylase; Belongs to the UbiD family.
       0.438
oxyR2
PsfB; Belongs to the LysR transcriptional regulatory family.
     
 0.432
B5T_04001
Oxidoreductase NAD-binding domain protein.
  
  
 0.425
ubiX-2
Putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.407
B5T_02868
Xanthine dehydrogenase accessory factor, putative.
       0.407
Your Current Organism:
Alcanivorax dieselolei
NCBI taxonomy Id: 930169
Other names: A. dieselolei B5, Alcanivorax dieselolei B5, Alcanivorax dieselolei str. B5, Alcanivorax dieselolei strain B5
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