STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5T_04092Prolyl 4-hydroxylase, alpha subunit. (235 aa)    
Predicted Functional Partners:
B5T_04091
Fused DNA-binding transcriptional dual regulator.
 
     0.873
B5T_04093
Short-chain dehydrogenase/reductase SDR.
       0.620
B5T_04090
Tryptophanyl-tRNA synthetase II; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.504
B5T_04089
Putative domain 1, putative.
       0.464
Your Current Organism:
Alcanivorax dieselolei
NCBI taxonomy Id: 930169
Other names: A. dieselolei B5, Alcanivorax dieselolei B5, Alcanivorax dieselolei str. B5, Alcanivorax dieselolei strain B5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.