Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOXL1Uncharacterized protein. (171 aa)    
Predicted Functional Partners:
NYNRIN
Integrase catalytic domain-containing protein.
    
 0.816
FBLN5
Fibulin 5.
   
 
 0.813
COL1A1
Collagen type I alpha 1 chain.
   
 0.715
CASP6
Caspase 6; Belongs to the peptidase C14A family.
    
 0.704
RNF17
Ring finger protein 17.
    
 
 0.670
COL3A1
Collagen type III alpha 1 chain.
   
 0.632
ELN
Uncharacterized protein.
    
 0.617
COL5A2
Collagen type V alpha 2 chain.
   
 0.603
FBLN1
Fibulin 1.
   
  
 0.599
CBLN3
Cerebellin 3 precursor.
    
 0.596
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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