Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP1SANT domain-containing protein. (2469 aa)    
Predicted Functional Partners:
BRF1
BRF1 RNA polymerase III transcription initiation factor subunit.
    
 0.995
BRF2
BRF2 RNA polymerase III transcription initiation factor subunit.
    
 0.995
GTF3C3
General transcription factor IIIC subunit 3.
   
 0.974
POLR3A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.952
GTF3C1
General transcription factor IIIC subunit 1.
    
 0.950
GTF3C5
General transcription factor IIIC subunit 5.
    
 0.943
POLR3F
RNA polymerase III subunit F.
    
 0.938
CRCP
CGRP receptor component.
    
 0.929
TBPL2
Uncharacterized protein.
    
 0.928
TBP
TATA-box binding protein.
    
 0.928
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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