Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC196Uncharacterized protein. (163 aa)    
Predicted Functional Partners:
KRTDAP
Keratinocyte differentiation associated protein.
  
     0.532
WASF1
WASP family member 1.
   
   0.525
GSG1
Germ cell associated 1.
      
 0.497
LOC100917463
Uncharacterized protein.
  
     0.484
G3VV15_SARHA
Uncharacterized protein.
  
     0.473
MROH2B
Maestro heat like repeat family member 2B.
  
   
 0.469
C11orf42
Chromosome 11 open reading frame 42.
  
     0.466
FNDC8
Fibronectin type-III domain-containing protein.
  
     0.466
ZSCAN29
Zinc finger and SCAN domain containing 29.
  
     0.465
G3VDC4_SARHA
Ig-like domain-containing protein.
  
     0.459
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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