Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
G3VE84_SARHAMFAP1 domain-containing protein. (397 aa)    
Predicted Functional Partners:
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
   
 0.904
ZMAT2
Zinc finger matrin-type 2.
   
 0.870
IK
IK cytokine.
   
 0.833
G3VUT2_SARHA
Uncharacterized protein.
   
 0.828
PRPF38A
Pre-mRNA processing factor 38A.
   
 0.828
UBL5
Ubiquitin like 5.
    
 0.821
G3W5D1_SARHA
Uncharacterized protein.
   
 0.811
PRPF6
Pre-mRNA processing factor 6.
   
 0.801
CDC40
Cell division cycle 40.
   
 0.799
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.745
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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