Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NUP88Nucleoporin 88. (679 aa)    
Predicted Functional Partners:
NUP98
Nucleoporin 98.
   
 0.997
NUP214
Nucleoporin 214.
   
 0.995
NUP153
Uncharacterized protein.
   
 0.994
NUP85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.992
NUP155
Nucleoporin 155.
   
 0.991
NUP93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.989
SEH1L
SEH1 like nucleoporin; Belongs to the WD repeat SEC13 family.
   
 0.988
NUP43
Nucleoporin 43.
   
 0.988
AAAS
Aladin WD repeat nucleoporin.
   
 0.985
RANBP2
RAN binding protein 2.
   
 0.984
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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