TPT1 protein (Sarcophilus harrisii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TPT1

TCTP domain-containing protein; Belongs to the TCTP family. (139 aa)

Predicted Functional Partners:

EEF1G

0.951

G3WCH4_SARHA

0.951

G3WJW5_SARHA

0.951

RPL8

0.947

RPS8

0.945

RPL14

0.944

RPL12

0.942

RPL27A

0.941

RPS3

0.941

RPLP2

0.940

Your Current Organism:

Sarcophilus harrisii

NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF1G	G3WCH4_SARHA	ENSSHAP00000003451	ENSSHAP00000013129	Uncharacterized protein.	EF-1-gamma C-terminal domain-containing protein.	0.918
EEF1G	G3WJW5_SARHA	ENSSHAP00000003451	ENSSHAP00000015720	Uncharacterized protein.	Uncharacterized protein.	0.918
EEF1G	RPL12	ENSSHAP00000003451	ENSSHAP00000021067	Uncharacterized protein.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.707
EEF1G	RPL14	ENSSHAP00000003451	ENSSHAP00000001788	Uncharacterized protein.	Ribosomal protein L14.	0.903
EEF1G	RPL27A	ENSSHAP00000003451	ENSSHAP00000000163	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.951
EEF1G	RPL8	ENSSHAP00000003451	ENSSHAP00000015925	Uncharacterized protein.	Ribosomal protein L8.	0.921
EEF1G	RPLP2	ENSSHAP00000003451	ENSSHAP00000001183	Uncharacterized protein.	Ribosomal protein lateral stalk subunit P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.794
EEF1G	RPS3	ENSSHAP00000003451	ENSSHAP00000013096	Uncharacterized protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.936
EEF1G	RPS8	ENSSHAP00000003451	ENSSHAP00000000125	Uncharacterized protein.	Ribosomal protein S8.	0.929
EEF1G	TPT1	ENSSHAP00000003451	ENSSHAP00000001734	Uncharacterized protein.	TCTP domain-containing protein; Belongs to the TCTP family.	0.951
G3WCH4_SARHA	EEF1G	ENSSHAP00000013129	ENSSHAP00000003451	EF-1-gamma C-terminal domain-containing protein.	Uncharacterized protein.	0.918
G3WCH4_SARHA	G3WJW5_SARHA	ENSSHAP00000013129	ENSSHAP00000015720	EF-1-gamma C-terminal domain-containing protein.	Uncharacterized protein.	0.918
G3WCH4_SARHA	RPL12	ENSSHAP00000013129	ENSSHAP00000021067	EF-1-gamma C-terminal domain-containing protein.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.707
G3WCH4_SARHA	RPL14	ENSSHAP00000013129	ENSSHAP00000001788	EF-1-gamma C-terminal domain-containing protein.	Ribosomal protein L14.	0.903
G3WCH4_SARHA	RPL27A	ENSSHAP00000013129	ENSSHAP00000000163	EF-1-gamma C-terminal domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.951
G3WCH4_SARHA	RPL8	ENSSHAP00000013129	ENSSHAP00000015925	EF-1-gamma C-terminal domain-containing protein.	Ribosomal protein L8.	0.921
G3WCH4_SARHA	RPLP2	ENSSHAP00000013129	ENSSHAP00000001183	EF-1-gamma C-terminal domain-containing protein.	Ribosomal protein lateral stalk subunit P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.794
G3WCH4_SARHA	RPS3	ENSSHAP00000013129	ENSSHAP00000013096	EF-1-gamma C-terminal domain-containing protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.936
G3WCH4_SARHA	RPS8	ENSSHAP00000013129	ENSSHAP00000000125	EF-1-gamma C-terminal domain-containing protein.	Ribosomal protein S8.	0.929
G3WCH4_SARHA	TPT1	ENSSHAP00000013129	ENSSHAP00000001734	EF-1-gamma C-terminal domain-containing protein.	TCTP domain-containing protein; Belongs to the TCTP family.	0.951