Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3VFE8_SARHAUncharacterized protein. (148 aa)    
Predicted Functional Partners:
FAM13A
Uncharacterized protein.
 
      0.899
MYPN
Myopalladin.
     
 0.477
FAM43A
Family with sequence similarity 43 member A.
      
 0.448
SIRT1
Sirtuin 1.
      
 0.447
HHIP
Hedgehog interacting protein.
    
 
 0.423
OGFOD2
Fe2OG dioxygenase domain-containing protein.
    
 
 0.405
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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