Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RP9Uncharacterized protein. (171 aa)    
Predicted Functional Partners:
PRPF4
Pre-mRNA processing factor 4.
      
 0.748
PRPF3
Pre-mRNA processing factor 3.
      
 0.724
DHX38
DEAH-box helicase 38.
   
 
 0.723
PRPF31
Pre-mRNA processing factor 31.
   
  
 0.693
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
      
 0.649
PRPF8
Pre-mRNA processing factor 8.
      
 0.649
PRPF6
Pre-mRNA processing factor 6.
      
 0.648
CWC25
CWC25 spliceosome associated protein homolog.
   
 
 0.605
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.600
RBPJL
Recombination signal binding protein for immunoglobulin kappa J region like.
    
 0.600
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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