Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC25Uncharacterized protein. (237 aa)    
Predicted Functional Partners:
GAL3ST4
Galactose-3-O-sulfotransferase 4.
      
 0.664
PGPEP1
Pyroglutamyl-peptidase I.
    
 
 0.623
CHST8
Carbohydrate sulfotransferase.
    
 0.582
LOC100925282
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
 0.578
PHF21A
PHD finger protein 21A.
    
 
 0.574
SLC4A3
Anion exchange protein.
     
 0.561
DDX20
DEAD-box helicase 20; Belongs to the DEAD box helicase family.
    
 0.560
RASAL1
RAS protein activator like 1.
      
 0.549
SIGIRR
Single Ig and TIR domain containing.
    
 0.539
CNOT10
CCR4-NOT transcription complex subunit 10.
      
 0.533
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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