STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTN3Reticulon. (959 aa)    
Predicted Functional Partners:
RTN4
Reticulon.
   
 0.991
BACE1
Beta-secretase 1; Belongs to the peptidase A1 family.
    
 0.944
BACE2
Beta-secretase 2; Belongs to the peptidase A1 family.
    
 0.927
ATL3
Atlastin GTPase 3.
   
 
 0.816
REEP5
Receptor expression-enhancing protein.
   
 
 0.766
G3VYW6_SARHA
Uncharacterized protein.
    
 
 0.729
LOC100932895
Uncharacterized protein.
     
  0.727
LINGO1
Leucine rich repeat and Ig domain containing 1.
   
 0.667
ATL2
Atlastin GTPase 2.
   
 
 0.667
ATL1
Atlastin GTPase 1.
   
 
 0.663
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.