STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM5Zinc finger protein. (488 aa)    
Predicted Functional Partners:
EDIL3
EGF like repeats and discoidin domains 3.
   
 
 0.522
LOC105750004
Uncharacterized protein.
   
 0.497
G3VZG7_SARHA
RING-type domain-containing protein.
   
 0.497
PCOLCE2
Procollagen C-endopeptidase enhancer 2.
      
 0.455
ADAM23
ADAM metallopeptidase domain 23.
      
 0.443
G3VRM0_SARHA
Uncharacterized protein.
    
 0.430
SVEP1
Uncharacterized protein.
    
 0.430
HAPLN1
Hyaluronan and proteoglycan link protein 1.
    
 0.411
BTN1A1
Butyrophilin subfamily 1 member A1.
   
 0.404
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.