STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDK5RAP1CDK5 regulatory subunit associated protein 1. (595 aa)    
Predicted Functional Partners:
EXOSC3
Exosome component 3.
    
 
 0.930
ENDOV
Endonuclease V.
   
 
 0.702
TRIT1
tRNA isopentenyltransferase 1; Belongs to the IPP transferase family.
  
  
 0.553
CDK5
Cyclin dependent kinase 5.
      
 0.544
EPRS1
Glutamyl-prolyl-tRNA synthetase.
  
  
 0.539
MRPS9
Mitochondrial ribosomal protein S9.
  
  
 0.491
POLR1A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.483
MRRF
Mitochondrial ribosome recycling factor.
  
  
 0.481
YARS1
Tyrosine--tRNA ligase.
  
  
 0.479
GTPBP3
GTP binding protein 3, mitochondrial.
   
  
 0.472
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.