STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGM1Transglutaminase 1. (821 aa)    
Predicted Functional Partners:
F13B
Coagulation factor XIII B chain.
    
 0.690
PPL
Periplakin.
     
 0.690
NIPAL4
NIPA like domain containing 4.
   
  
 0.618
G3WV15_SARHA
Uncharacterized protein.
     
 0.560
CDSN
Corneodesmosin.
   
 
 0.559
EVPL
SH3 domain-containing protein.
     
 0.543
PNPLA1
Patatin like phospholipase domain containing 1.
   
  
 0.540
ALOXE3
Arachidonate lipoxygenase 3.
   
 0.540
CNDP1
Carnosine dipeptidase 1.
    
 
 0.505
SERPINE2
Serpin family E member 2; Belongs to the serpin family.
     
 0.466
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.