STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM28Tripartite motif containing 28. (578 aa)    
Predicted Functional Partners:
CBX5
Chromobox 5.
    
 0.929
SMARCAD1
Uncharacterized protein.
   
 
 0.927
CBX3
Chromobox 3.
    
 0.837
CBX1
Uncharacterized protein.
    
 0.831
SETDB1
SET domain bifurcated histone lysine methyltransferase 1.
   
 0.735
CHD3
Chromodomain helicase DNA binding protein 3.
   
0.734
SMAD4
Mothers against decapentaplegic homolog.
   
 0.725
TRIM24
Tripartite motif containing 24.
    
 
0.719
ZNF746
Zinc finger protein 746.
   
 0.695
DNMT1
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
 
 0.694
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.