STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL3A1Collagen type III alpha 1 chain. (1464 aa)    
Predicted Functional Partners:
COL1A2
Collagen type I alpha 2 chain.
  
0.997
COL1A1
Collagen type I alpha 1 chain.
  
 
0.997
COL5A2
Collagen type V alpha 2 chain.
  
 
0.965
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.920
G3VCI8_SARHA
Ig-like domain-containing protein.
     
 0.905
G3VU32_SARHA
Ig-like domain-containing protein.
     
 0.905
ITGA2
Integrin_alpha2 domain-containing protein.
     
 0.904
G3W639_SARHA
Ig-like domain-containing protein.
    
  0.904
LOC111720256
Uncharacterized protein.
     
  0.900
LOC100916115
Ig-like domain-containing protein.
     
  0.900
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.