STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THBS1Thrombospondin 1. (1180 aa)    
Predicted Functional Partners:
CD47
CD47 molecule.
   
 
 0.981
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.975
MMP9
Matrix metallopeptidase 9.
   
 0.972
CD36
CD36 molecule; Belongs to the CD36 family.
   
 0.971
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.966
ITGA3
Integrin subunit alpha 3; Belongs to the integrin alpha chain family.
   
 0.961
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
   
 0.951
ITGA2B
Integrin subunit alpha 2b; Belongs to the integrin alpha chain family.
   
 0.942
LTBP1
Latent transforming growth factor beta binding protein 1.
   
 
 0.926
MMP2
Matrix metallopeptidase 2.
   
 0.921
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.