STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC3H1Ring finger and CCCH-type domains 1. (1134 aa)    
Predicted Functional Partners:
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 
 0.667
G3VMG1_SARHA
Uncharacterized protein.
    
 
 0.588
RC3H2
Ring finger and CCCH-type domains 2.
  
 
  
0.542
ICOS
IGv domain-containing protein.
      
 0.536
MYSM1
Myb like, SWIRM and MPN domains 1.
   
   0.530
CNOT9
CCR4-NOT transcription complex subunit 9.
    
 
 0.529
CNOT11
CCR4-NOT transcription complex subunit 11.
    
 
 0.508
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.495
G3W573_SARHA
Uncharacterized protein.
    
 
 0.494
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.466
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.