STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF122Ring finger protein 122. (150 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.642
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.638
UBC
Uncharacterized protein.
    
 0.524
UBB
Ubiquitin B.
    
 0.524
TXLNB
Taxilin beta.
      
 0.523
SMAD6
Mothers against decapentaplegic homolog.
   
 0.465
SMAD7
Mothers against decapentaplegic homolog.
   
 0.465
L3HYPDH
Trans-L-3-hydroxyproline dehydratase.
      
 0.461
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.449
CLRN3
Uncharacterized protein.
      
 0.447
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.