G3W9G3_SARHA protein (Sarcophilus harrisii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Sarcophilus harrisii

NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCE1	G3W9G3_SARHA	ENSSHAP00000011303	ENSSHAP00000012068	ATP binding cassette subfamily E member 1.	Flavodoxin-like domain-containing protein.	0.514
ABCE1	MMS19	ENSSHAP00000011303	ENSSHAP00000021459	ATP binding cassette subfamily E member 1.	MMS19 homolog, cytosolic iron-sulfur assembly component.	0.728
ENDOV	G3W9G3_SARHA	ENSSHAP00000009726	ENSSHAP00000012068	Endonuclease V.	Flavodoxin-like domain-containing protein.	0.760
FTSJ1	G3W9G3_SARHA	ENSSHAP00000014764	ENSSHAP00000012068	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	Flavodoxin-like domain-containing protein.	0.501
FTSJ1	LCMT2	ENSSHAP00000014764	ENSSHAP00000014844	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	Uncharacterized protein.	0.488
FTSJ1	TRMT12	ENSSHAP00000014764	ENSSHAP00000003800	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	tRNA methyltransferase 12 homolog.	0.743
FTSJ1	TRMT5	ENSSHAP00000014764	ENSSHAP00000003676	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	0.616
G3W9G3_SARHA	ABCE1	ENSSHAP00000012068	ENSSHAP00000011303	Flavodoxin-like domain-containing protein.	ATP binding cassette subfamily E member 1.	0.514
G3W9G3_SARHA	ENDOV	ENSSHAP00000012068	ENSSHAP00000009726	Flavodoxin-like domain-containing protein.	Endonuclease V.	0.760
G3W9G3_SARHA	FTSJ1	ENSSHAP00000012068	ENSSHAP00000014764	Flavodoxin-like domain-containing protein.	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	0.501
G3W9G3_SARHA	LCMT2	ENSSHAP00000012068	ENSSHAP00000014844	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.585
G3W9G3_SARHA	MMS19	ENSSHAP00000012068	ENSSHAP00000021459	Flavodoxin-like domain-containing protein.	MMS19 homolog, cytosolic iron-sulfur assembly component.	0.644
G3W9G3_SARHA	PWP1	ENSSHAP00000012068	ENSSHAP00000018911	Flavodoxin-like domain-containing protein.	PWP1 homolog, endonuclein.	0.700
G3W9G3_SARHA	TRMT12	ENSSHAP00000012068	ENSSHAP00000003800	Flavodoxin-like domain-containing protein.	tRNA methyltransferase 12 homolog.	0.622
G3W9G3_SARHA	TRMT5	ENSSHAP00000012068	ENSSHAP00000003676	Flavodoxin-like domain-containing protein.	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	0.696
G3W9G3_SARHA	TYW5	ENSSHAP00000012068	ENSSHAP00000016873	Flavodoxin-like domain-containing protein.	tRNA-yW synthesizing protein 5.	0.649
G3W9G3_SARHA	WDR17	ENSSHAP00000012068	ENSSHAP00000018338	Flavodoxin-like domain-containing protein.	WD repeat domain 17.	0.569
LCMT2	FTSJ1	ENSSHAP00000014844	ENSSHAP00000014764	Uncharacterized protein.	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	0.488
LCMT2	G3W9G3_SARHA	ENSSHAP00000014844	ENSSHAP00000012068	Uncharacterized protein.	Flavodoxin-like domain-containing protein.	0.585
LCMT2	TRMT12	ENSSHAP00000014844	ENSSHAP00000003800	Uncharacterized protein.	tRNA methyltransferase 12 homolog.	0.621