Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GSC | LDB1 | ENSSHAP00000017176 | ENSSHAP00000004723 | Goosecoid homeobox. | LIM domain binding 1. | 0.411 |
GSC | LDB2 | ENSSHAP00000017176 | ENSSHAP00000020805 | Goosecoid homeobox. | LIM domain binding 2. | 0.411 |
GSC | NHLH2 | ENSSHAP00000017176 | ENSSHAP00000018223 | Goosecoid homeobox. | Nescient helix-loop-helix 2. | 0.458 |
LDB1 | GSC | ENSSHAP00000004723 | ENSSHAP00000017176 | LIM domain binding 1. | Goosecoid homeobox. | 0.411 |
LDB1 | NHLH2 | ENSSHAP00000004723 | ENSSHAP00000018223 | LIM domain binding 1. | Nescient helix-loop-helix 2. | 0.484 |
LDB1 | TCF12 | ENSSHAP00000004723 | ENSSHAP00000018774 | LIM domain binding 1. | Transcription factor 12. | 0.661 |
LDB1 | TCF3 | ENSSHAP00000004723 | ENSSHAP00000016137 | LIM domain binding 1. | Transcription factor 3. | 0.858 |
LDB1 | TCF4 | ENSSHAP00000004723 | ENSSHAP00000017613 | LIM domain binding 1. | Transcription factor 4. | 0.774 |
LDB2 | GSC | ENSSHAP00000020805 | ENSSHAP00000017176 | LIM domain binding 2. | Goosecoid homeobox. | 0.411 |
LDB2 | NHLH2 | ENSSHAP00000020805 | ENSSHAP00000018223 | LIM domain binding 2. | Nescient helix-loop-helix 2. | 0.484 |
LDB2 | TCF12 | ENSSHAP00000020805 | ENSSHAP00000018774 | LIM domain binding 2. | Transcription factor 12. | 0.600 |
LDB2 | TCF3 | ENSSHAP00000020805 | ENSSHAP00000016137 | LIM domain binding 2. | Transcription factor 3. | 0.851 |
LDB2 | TCF4 | ENSSHAP00000020805 | ENSSHAP00000017613 | LIM domain binding 2. | Transcription factor 4. | 0.600 |
NHLH2 | GSC | ENSSHAP00000018223 | ENSSHAP00000017176 | Nescient helix-loop-helix 2. | Goosecoid homeobox. | 0.458 |
NHLH2 | LDB1 | ENSSHAP00000018223 | ENSSHAP00000004723 | Nescient helix-loop-helix 2. | LIM domain binding 1. | 0.484 |
NHLH2 | LDB2 | ENSSHAP00000018223 | ENSSHAP00000020805 | Nescient helix-loop-helix 2. | LIM domain binding 2. | 0.484 |
NHLH2 | TCF12 | ENSSHAP00000018223 | ENSSHAP00000018774 | Nescient helix-loop-helix 2. | Transcription factor 12. | 0.502 |
NHLH2 | TCF3 | ENSSHAP00000018223 | ENSSHAP00000016137 | Nescient helix-loop-helix 2. | Transcription factor 3. | 0.502 |
NHLH2 | TCF4 | ENSSHAP00000018223 | ENSSHAP00000017613 | Nescient helix-loop-helix 2. | Transcription factor 4. | 0.502 |
TCF12 | LDB1 | ENSSHAP00000018774 | ENSSHAP00000004723 | Transcription factor 12. | LIM domain binding 1. | 0.661 |
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