STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIGNL1Fidgetin like 1; Belongs to the AAA ATPase family. (670 aa)    
Predicted Functional Partners:
G3W491_SARHA
UBX domain-containing protein 7.
   
 0.917
IST1
IST1 factor associated with ESCRT-III.
    
 0.753
CHMP3
Uncharacterized protein.
   
 0.681
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.677
DERL1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.610
UBXN1
UBX domain protein 1.
   
 0.584
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
   
 0.578
FAAP100
FA core complex associated protein 100.
   
 0.575
CHMP7
Charged multivesicular body protein 7.
   
 
 0.572
G3W342_SARHA
Uncharacterized protein.
    
 0.562
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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