Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EU95_0179D-alanyl-D-alanine carboxypeptidase; Alternative locus ID: PMIT9201_0854. (407 aa)    
Predicted Functional Partners:
EU95_0030
Multimodular transpeptidase-transglycosylase; Alternative locus ID: PMIT9201_1672.
     
 0.921
EU95_1379
Cell division protein FtsI (Peptidoglycan synthetase); Alternative locus ID: PMIT9201_1270.
     
 0.901
EU95_1970
Cell division protein FtsI (Peptidoglycan synthetase); Alternative locus ID: PMIT9201_0302.
     
 0.901
EU95_1178
D-alanyl-D-alanine carboxypeptidase; Alternative locus ID: PMIT9201_1215.
     
 0.896
EU95_0761
Putative LysM domain; Alternative locus ID: PMIT9201_1640.
    
 0.845
EU95_0122
Muramoyltetrapeptide carboxypeptidase; Alternative locus ID: PMIT9201_1818.
 
  
 0.843
EU95_0180
Hypothetical protein; Alternative locus ID: PMIT9201_0855; All3116 protein.
       0.822
EU95_0181
Cysteine desulfurase; Alternative locus ID: PMIT9201_0856.
       0.822
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.822
EU95_0930
Cell division protein FtsW; Alternative locus ID: PMIT9201_0753; Belongs to the SEDS family.
     
 0.769
Your Current Organism:
Prochlorococcus marinus MIT9201
NCBI taxonomy Id: 93057
Other names: P. marinus str. MIT 9201, Prochlorococcus marinus str. MIT 9201, Prochlorococcus sp. MIT 9201, Prochlorococcus sp. MIT9201
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