Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EU95_0232Error-prone repair protein UmuD; Alternative locus ID: PMIT9201_0907; Belongs to the peptidase S24 family. (138 aa)    
Predicted Functional Partners:
EU95_0233
Error-prone; Alternative locus ID: PMIT9201_0908; lesion bypass DNA polymerase V (UmuC).
 
 0.995
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.957
EU95_0234
Putative Serine hydroxymethyltransferase; Alternative locus ID: PMIT9201_0909.
       0.809
EU95_0241
DNA polymerasee III alpha subunit; Alternative locus ID: PMIT9201_0916.
    
 0.788
rlmH
LSU m3Psi1915 methyltransferase RlmH ybeA; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.628
EU95_0230
Hypothetical protein; Alternative locus ID: PMIT9201_0905; FIG00941608: hypothetical protein.
       0.600
EU95_1564
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.597
EU95_1690
ATP-dependent DNA helicase UvrD/PcrA; Alternative locus ID: PMIT9201_0022.
     
 0.564
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.507
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.501
Your Current Organism:
Prochlorococcus marinus MIT9201
NCBI taxonomy Id: 93057
Other names: P. marinus str. MIT 9201, Prochlorococcus marinus str. MIT 9201, Prochlorococcus sp. MIT 9201, Prochlorococcus sp. MIT9201
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