Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EU95_0804Ribonuclease D related protein; Alternative locus ID: PMIT9201_0627. (211 aa)    
Predicted Functional Partners:
EU95_0132
3'-to-5' exoribonuclease RNase R; Alternative locus ID: PMIT9201_0807; Belongs to the RNR ribonuclease family.
   
 0.948
EU95_0161
Exoribonuclease II; Alternative locus ID: PMIT9201_0836.
   
 0.948
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
     
 0.919
rpsD
SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.898
rpsK
SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.892
EU95_0589
Hypothetical protein; Alternative locus ID: PMIT9201_0554; FIG137771: hypothetical protein.
     
  0.851
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
   
 
 0.833
EU95_0887
Cytoplasmic axial filament protein CafA and Ribonuclease G Ribonuclease E; Alternative locus ID: PMIT9201_0710.
     
 0.804
EU95_1391
SSU ribosomal protein S1p; Alternative locus ID: PMIT9201_1282.
   
  0.797
EU95_1681
SSU ribosomal protein S1p; Alternative locus ID: PMIT9201_0013.
   
  0.797
Your Current Organism:
Prochlorococcus marinus MIT9201
NCBI taxonomy Id: 93057
Other names: P. marinus str. MIT 9201, Prochlorococcus marinus str. MIT 9201, Prochlorococcus sp. MIT 9201, Prochlorococcus sp. MIT9201
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