STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU95_0897Serine protease; Alternative locus ID: PMIT9201_0720; trypsin family:Chymotrypsin serine protease. (376 aa)    
Predicted Functional Partners:
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.709
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.670
rimP
Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
     
 0.650
EU95_0587
ATPase of the AAA+ family; Alternative locus ID: PMIT9201_0552.
    
 0.619
EU95_1708
ADP-ribose pyrophosphatasee; Alternative locus ID: PMIT9201_0040.
    
  0.607
EU95_0506
FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); Alternative locus ID: PMIT9201_0471.
   
 
 0.584
rplK
LSU ribosomal protein L11p (L12e); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.572
EU95_1027
Putative permease; Alternative locus ID: PMIT9201_1749.
    
 
 0.567
EU95_0896
Hypothetical protein; Alternative locus ID: PMIT9201_0719.
       0.563
rpsF
SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.
   
   0.540
Your Current Organism:
Prochlorococcus marinus MIT9201
NCBI taxonomy Id: 93057
Other names: P. marinus str. MIT 9201, Prochlorococcus marinus str. MIT 9201, Prochlorococcus sp. MIT 9201, Prochlorococcus sp. MIT9201
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.