Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EU95_0958DNA-directed RNA polymerasee omega subunit; Alternative locus ID: PMIT9201_0781. (78 aa)    
Predicted Functional Partners:
EU95_0852
DNA-directed RNA polymerasee alpha subunit; Alternative locus ID: PMIT9201_0675.
  
 0.997
rpoB
DNA-directed RNA polymerasee beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.993
rpoC2
DNA-directed RNA polymerasee delta (beta'') subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.
 
 0.991
rpoC1
DNA-directed RNA polymerasee gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.989
rpsB
SSU ribosomal protein S2p (SAe); Alternative locus ID: PMIT9201_1207; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.951
EU95_0959
Hypothetical protein; Alternative locus ID: PMIT9201_0782; FIG00940322: hypothetical protein.
 
     0.937
sigA
Group 2 RNA polymerasee sigma factor RNA polymerasee sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.937
rpsM
SSU ribosomal protein S13p (S18e); Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
  
 
 0.927
EU95_1794
LSU ribosomal protein L10p (P0); Alternative locus ID: PMIT9201_0126.
   
 
 0.927
rpmF
LSU ribosomal protein L32p; Alternative locus ID: PMIT9201_0813; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.925
Your Current Organism:
Prochlorococcus marinus MIT9201
NCBI taxonomy Id: 93057
Other names: P. marinus str. MIT 9201, Prochlorococcus marinus str. MIT 9201, Prochlorococcus sp. MIT 9201, Prochlorococcus sp. MIT9201
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