STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU95_1278Lycopene epsilon cyclase; Alternative locus ID: PMIT9201_1388. (427 aa)    
Predicted Functional Partners:
EU95_1883
Pro-zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.934
EU95_1463
Carotenoid cis-trans isomerase; Alternative locus ID: PMIT9201_1466.
  
 
 0.916
EU95_1515
Lycopene beta cyclase; Alternative locus ID: PMIT9201_1518.
  
  
 
0.908
EU95_1277
Short-chain dehydrogenase/reductase (SDR) :Glucose; Alternative locus ID: PMIT9201_1387.
     
 0.825
EU95_0561
Sterol desaturase-like protein; Alternative locus ID: PMIT9201_0526.
   
 0.677
EU95_1484
Hypothetical protein; Alternative locus ID: PMIT9201_1487; FIG00940986: hypothetical protein.
  
     0.656
EU95_1828
Mg-protoporphyrin O-methyltransferase; Alternative locus ID: PMIT9201_0160.
  
 
 0.620
EU95_1279
Light-dependent protochlorophyllide reductase; Alternative locus ID: PMIT9201_1389.
       0.596
EU95_1854
Phytoene synthase; Alternative locus ID: PMIT9201_0186.
  
 
 0.589
EU95_0753
Hypothetical protein; Alternative locus ID: PMIT9201_1632.
  
 
 0.577
Your Current Organism:
Prochlorococcus marinus MIT9201
NCBI taxonomy Id: 93057
Other names: P. marinus str. MIT 9201, Prochlorococcus marinus str. MIT 9201, Prochlorococcus sp. MIT 9201, Prochlorococcus sp. MIT9201
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.