Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
cpeAHypothetical protein. (155 aa)    
Predicted Functional Partners:
cpeB
Phycobilisome protein.
 
 
 0.998
ABX08271.1
Hypothetical protein; Belongs to the phycobilisome linker protein family.
 
 
 0.997
cpeT
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
  
 0.979
cpeS
Phycoerythrin linker protein CpeS-like protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
  
 0.979
ABX08266.1
PBS lyase HEAT-like repeat; COG1413 FOG: HEAT repeat [Energy production and conversion].
  
  
 0.977
cpeZ
Hypothetical protein.
    
 0.975
cpeY
Hypothetical protein.
    
 0.937
glgC
COG448 ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
    
 
 0.807
pebA
Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family.
  
   
 0.804
pebB
Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family.
  
   
 0.771
Your Current Organism:
Prochlorococcus marinus MIT9211
NCBI taxonomy Id: 93059
Other names: P. marinus str. MIT 9211, Prochlorococcus marinus str. MIT 9211, Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211
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