Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpeZHypothetical protein. (200 aa)    
Predicted Functional Partners:
cpeA
Hypothetical protein.
    
 0.975
cpeY
Hypothetical protein.
    
 0.961
cpeB
Phycobilisome protein.
    
 0.949
ABX08266.1
PBS lyase HEAT-like repeat; COG1413 FOG: HEAT repeat [Energy production and conversion].
     
 0.934
cpeS
Phycoerythrin linker protein CpeS-like protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
     
 0.929
cpeT
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
     
 0.904
ABX08271.1
Hypothetical protein; Belongs to the phycobilisome linker protein family.
     
 0.903
efp
Elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.520
Your Current Organism:
Prochlorococcus marinus MIT9211
NCBI taxonomy Id: 93059
Other names: P. marinus str. MIT 9211, Prochlorococcus marinus str. MIT 9211, Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211
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