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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugdCOG1004 Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (489 aa)    
Predicted Functional Partners:
ABX09215.1
COG451 Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].
 
 0.956
ABX09223.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.948
galE
UDP-glucose-4-epimerase; COG1087 UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.947
ABX09225.1
COG451 Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].
 
 0.936
sqdB
Sulfolipid (UDP-sulfoquinovose) biosynthesis protein; COG451 Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].
  
 0.927
manC
COG836 Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.658
ABX09780.1
Sucrose phosphate synthase; COG438 Glycosyltransferase [Cell envelope biogenesis, outer membrane].
  
  
 0.617
ABX09716.1
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane].
  
  
 0.570
ABX09170.1
COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
  
  
 0.564
ABX08272.1
COG2211 Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].
       0.552
Your Current Organism:
Prochlorococcus marinus MIT9211
NCBI taxonomy Id: 93059
Other names: P. marinus str. MIT 9211, Prochlorococcus marinus str. MIT 9211, Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211
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