STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmKCarboxysome shell protein CsoS1; COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion]. (103 aa)    
Predicted Functional Partners:
ABX08488.1
COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion].
 
 
 
 0.872
ccmL
COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion].
 
 
 
 0.846
rbcL
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.800
csoS2
Carboxysome shell protein CsoS2.
 
   
 0.745
csoS3
Carboxysome shell protein CsoS3.
 
   
 0.729
rbcS
COG4451 Ribulose bisphosphate carboxylase small subunit [Energy production and conversion].
   
 
 0.728
ABX08480.1
Conserved hypothetical protein.
 
 
 
 0.670
ABX08481.1
HAM1 family protein; COG127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism].
       0.502
ABX08490.1
COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism].
 
     0.477
ABX08056.1
COG625 Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].
      
 0.410
Your Current Organism:
Prochlorococcus marinus MIT9211
NCBI taxonomy Id: 93059
Other names: P. marinus str. MIT 9211, Prochlorococcus marinus str. MIT 9211, Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211
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