Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABX09341.1Conserved hypothetical protein. (194 aa)    
Predicted Functional Partners:
ABX09342.1
COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown].
       0.817
ABX09613.1
Conserved hypothetical protein.
  
     0.774
ABX08994.1
Conserved hypothetical protein.
  
     0.773
ABX08185.1
Conserved hypothetical protein.
  
     0.769
rpoZ
Putative DNA-directed RNA polymerase (omega chain); Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.769
secE
Putative preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.768
ABX08064.1
Conserved hypothetical protein.
  
     0.765
ABX08194.1
Conserved hypothetical protein.
  
     0.764
ABX09247.1
Conserved hypothetical protein.
  
     0.763
ABX08874.1
Conserved hypothetical protein.
  
     0.761
Your Current Organism:
Prochlorococcus marinus MIT9211
NCBI taxonomy Id: 93059
Other names: P. marinus str. MIT 9211, Prochlorococcus marinus str. MIT 9211, Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211
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