STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX09464.1Hypothetical protein. (557 aa)    
Predicted Functional Partners:
ABX09463.1
Hypothetical protein.
 
     0.914
ABX09670.1
COG3063 Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
  
   
 0.714
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity.
   
 0.670
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.669
ABX09716.1
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane].
  
 
 0.665
ABX09450.1
G-protein beta WD-40 repeat-containing protein; COG2319 FOG: WD40 repeat [General function prediction only].
  
 0.521
rpoA
Bacterial RNA polymerase, alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.491
ABX08163.1
Conserved hypothetical protein.
    
 
 0.437
glnB
COG347 Nitrogen regulatory protein PII [Amino acid transport and metabolism]; Belongs to the P(II) protein family.
    
 
 0.437
ABX08690.1
Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site; COG2303 Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].
    
 0.435
Your Current Organism:
Prochlorococcus marinus MIT9211
NCBI taxonomy Id: 93059
Other names: P. marinus str. MIT 9211, Prochlorococcus marinus str. MIT 9211, Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.