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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX09518.1COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]. (924 aa)    
Predicted Functional Partners:
bioF
Putative 8-amino-7-oxononanoate synthase; COG156 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].
       0.639
ABX09520.1
Conserved hypothetical protein.
       0.639
ABX09521.1
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].
       0.639
bioD
Putative Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
       0.639
bioA
Putative diaminopelargonic acid synthase; COG161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.531
ABX09190.1
Hypothetical protein; Belongs to the OprB family.
  
     0.438
ABX09189.1
Hypothetical protein; Belongs to the OprB family.
  
     0.431
cobB
COG1797 Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism].
   
    0.404
Your Current Organism:
Prochlorococcus marinus MIT9211
NCBI taxonomy Id: 93059
Other names: P. marinus str. MIT 9211, Prochlorococcus marinus str. MIT 9211, Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211
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