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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABV49738.1Cytochrome b6f complex subunit PetL. (30 aa)    
Predicted Functional Partners:
ABV49739.1
Conserved hypothetical protein.
       0.686
ABV49740.1
COG3146 Uncharacterized protein conserved in bacteria [Function unknown].
       0.570
ABV49741.1
RibD/ribG C-terminal domain; COG1985 Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].
       0.551
ABV49742.1
COG720 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].
       0.551
Your Current Organism:
Prochlorococcus marinus MIT9215
NCBI taxonomy Id: 93060
Other names: P. marinus str. MIT 9215, Prochlorococcus marinus MIT 9215, Prochlorococcus marinus str. MIT 9215, Prochlorococcus sp. MIT 9215, Prochlorococcus sp. MIT9215
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