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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABV49754.1Conserved hypothetical protein. (142 aa)    
Predicted Functional Partners:
iscA
COG316 Uncharacterized conserved protein [Function unknown]; Belongs to the HesB/IscA family.
       0.830
ABV49755.1
COG4370 Uncharacterized protein conserved in bacteria [Function unknown].
       0.830
ABV49756.1
Conserved hypothetical protein.
       0.830
ABV49761.1
Conserved hypothetical protein; Belongs to the UPF0367 family.
  
     0.760
ABV50453.1
Conserved hypothetical protein.
  
     0.759
ABV51309.1
Conserved hypothetical protein.
  
     0.759
ABV51197.1
Conserved hypothetical protein.
  
     0.755
ABV50553.1
Conserved hypothetical protein.
  
     0.754
ABV49889.1
Conserved hypothetical protein.
  
     0.752
secE
Putative preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.750
Your Current Organism:
Prochlorococcus marinus MIT9215
NCBI taxonomy Id: 93060
Other names: P. marinus str. MIT 9215, Prochlorococcus marinus MIT 9215, Prochlorococcus marinus str. MIT 9215, Prochlorococcus sp. MIT 9215, Prochlorococcus sp. MIT9215
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