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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABV50120.1COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]. (496 aa)    
Predicted Functional Partners:
ABV50118.1
Conserved hypothetical protein.
 
     0.854
ABV50119.1
Hypothetical protein.
       0.830
ABV51203.1
DNA photolyase-like protein.
 
   
 0.812
ABV50117.1
COG3011 Uncharacterized protein conserved in bacteria [Function unknown].
 
     0.745
ABV50012.1
COG415 Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].
 
   
 0.743
phr
COG415 Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].
 
   
 0.561
ABV50116.1
Conserved hypothetical protein.
       0.529
spoU
tRNA/rRNA methyltransferase (SpoU); Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.445
Your Current Organism:
Prochlorococcus marinus MIT9215
NCBI taxonomy Id: 93060
Other names: P. marinus str. MIT 9215, Prochlorococcus marinus MIT 9215, Prochlorococcus marinus str. MIT 9215, Prochlorococcus sp. MIT 9215, Prochlorococcus sp. MIT9215
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