Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacBPutative D-Ala-D-Ala carboxypeptidase 3 (S13) family. (408 aa)    
Predicted Functional Partners:
mrcB
COG744 Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].
     
 0.929
ABV49667.1
COG768 Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].
     
 0.910
ftsI
Putative peptidoglycan synthetase (pbp transpeptidase domain); COG768 Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].
     
 0.910
vanY
COG1876 D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].
     
 0.906
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.820
nifS-2
Possible cysteine desulfurase (class-V aminotransferase family); COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
       0.820
ABV50621.1
Conserved hypothetical protein.
       0.820
leuS
COG495 Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.637
galM
COG2017 Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism].
  
    0.458
ABV49972.1
Possible LysM domain.
     
 0.409
Your Current Organism:
Prochlorococcus marinus MIT9215
NCBI taxonomy Id: 93060
Other names: P. marinus str. MIT 9215, Prochlorococcus marinus MIT 9215, Prochlorococcus marinus str. MIT 9215, Prochlorococcus sp. MIT 9215, Prochlorococcus sp. MIT9215
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