Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABD29272.1Conserved hypothetical protein. (230 aa)    
Predicted Functional Partners:
ABD29273.1
Conserved hypothetical protein.
 
  
 0.886
ABD29271.1
Conserved hypothetical protein.
 
  
 0.852
ABD29275.1
Conserved hypothetical protein.
 
  
 0.750
ABD29403.1
Conserved hypothetical protein.
 
  
 0.593
ABD29274.1
Conserved hypothetical protein.
  
  
 0.578
ABD29270.1
Conserved hypothetical protein.
       0.572
ABD29296.1
Capsular polysaccharide synthesis enzyme Cap5B.
 
  
 0.564
ABD31986.1
Capsular polysaccharide biosynthesis protein Cap5B.
 
  
 0.550
ABD29300.1
Capsular polysaccharide synthesis enzyme Cap8F.
  
  
 0.508
ABD29295.1
Capsular polysaccharide biosynthesis protein, putative.
 
  
 0.487
Your Current Organism:
Staphylococcus aureus
NCBI taxonomy Id: 93061
Other names: S. aureus subsp. aureus NCTC 8325, Staphylococcus aureus NCTC 8325, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus subsp. aureus str. NCTC 8325, Staphylococcus aureus subsp. aureus strain NCTC 8325
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