Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABD29928.1 | ABD29929.1 | SAOUHSC_00800 | SAOUHSC_00801 | Conserved hypothetical protein. | Preprotein translocase, SecG subunit; Subunit of the protein translocation channel SecYEG (By similarity). While not essential, it considerably increases the export efficiency of extracellular proteins; Belongs to the SecG family. | 0.733 |
| ABD29928.1 | ABD29930.1 | SAOUHSC_00800 | SAOUHSC_00802 | Conserved hypothetical protein. | Carboxylesterase precursor, putative. | 0.717 |
| ABD29928.1 | rnr | SAOUHSC_00800 | SAOUHSC_00803 | Conserved hypothetical protein. | Ribonuclease R, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.691 |
| ABD29928.1 | smpB | SAOUHSC_00800 | SAOUHSC_00804 | Conserved hypothetical protein. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.678 |
| ABD29929.1 | ABD29928.1 | SAOUHSC_00801 | SAOUHSC_00800 | Preprotein translocase, SecG subunit; Subunit of the protein translocation channel SecYEG (By similarity). While not essential, it considerably increases the export efficiency of extracellular proteins; Belongs to the SecG family. | Conserved hypothetical protein. | 0.733 |
| ABD29929.1 | ABD29930.1 | SAOUHSC_00801 | SAOUHSC_00802 | Preprotein translocase, SecG subunit; Subunit of the protein translocation channel SecYEG (By similarity). While not essential, it considerably increases the export efficiency of extracellular proteins; Belongs to the SecG family. | Carboxylesterase precursor, putative. | 0.758 |
| ABD29929.1 | rnr | SAOUHSC_00801 | SAOUHSC_00803 | Preprotein translocase, SecG subunit; Subunit of the protein translocation channel SecYEG (By similarity). While not essential, it considerably increases the export efficiency of extracellular proteins; Belongs to the SecG family. | Ribonuclease R, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.762 |
| ABD29929.1 | smpB | SAOUHSC_00801 | SAOUHSC_00804 | Preprotein translocase, SecG subunit; Subunit of the protein translocation channel SecYEG (By similarity). While not essential, it considerably increases the export efficiency of extracellular proteins; Belongs to the SecG family. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.777 |
| ABD29930.1 | ABD29928.1 | SAOUHSC_00802 | SAOUHSC_00800 | Carboxylesterase precursor, putative. | Conserved hypothetical protein. | 0.717 |
| ABD29930.1 | ABD29929.1 | SAOUHSC_00802 | SAOUHSC_00801 | Carboxylesterase precursor, putative. | Preprotein translocase, SecG subunit; Subunit of the protein translocation channel SecYEG (By similarity). While not essential, it considerably increases the export efficiency of extracellular proteins; Belongs to the SecG family. | 0.758 |
| ABD29930.1 | rnr | SAOUHSC_00802 | SAOUHSC_00803 | Carboxylesterase precursor, putative. | Ribonuclease R, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.880 |
| ABD29930.1 | smpB | SAOUHSC_00802 | SAOUHSC_00804 | Carboxylesterase precursor, putative. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.781 |
| cshA | dnaK | SAOUHSC_02316 | SAOUHSC_01683 | ATP-dependent RNA helicase, DEAD box family, putative; A probable ATP-dependent RNA helicase with RNA-dependent ATPase activity. Involved in regulation of biofilm formation and hemolysis via its effects on stability of mRNA from the agrBDCA operon. Also involved in response to cold stress. | DNAk protein, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.523 |
| cshA | pnp | SAOUHSC_02316 | SAOUHSC_01251 | ATP-dependent RNA helicase, DEAD box family, putative; A probable ATP-dependent RNA helicase with RNA-dependent ATPase activity. Involved in regulation of biofilm formation and hemolysis via its effects on stability of mRNA from the agrBDCA operon. Also involved in response to cold stress. | Polyribonucleotide nucleotidyltransferase, putative; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.985 |
| cshA | rnr | SAOUHSC_02316 | SAOUHSC_00803 | ATP-dependent RNA helicase, DEAD box family, putative; A probable ATP-dependent RNA helicase with RNA-dependent ATPase activity. Involved in regulation of biofilm formation and hemolysis via its effects on stability of mRNA from the agrBDCA operon. Also involved in response to cold stress. | Ribonuclease R, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.702 |
| cshA | rny | SAOUHSC_02316 | SAOUHSC_01263 | ATP-dependent RNA helicase, DEAD box family, putative; A probable ATP-dependent RNA helicase with RNA-dependent ATPase activity. Involved in regulation of biofilm formation and hemolysis via its effects on stability of mRNA from the agrBDCA operon. Also involved in response to cold stress. | Conserved hypothetical protein; Endoribonuclease that initiates mRNA decay (By similarity). In vitro, catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'- cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'-terminal of RNA. Activates sarZ and agr operon resulting in the expression of virulence genes such as hemolysin, DNase and protease. Contributes to virulence in both silkworm-infection model and mice. | 0.989 |
| dnaK | cshA | SAOUHSC_01683 | SAOUHSC_02316 | DNAk protein, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | ATP-dependent RNA helicase, DEAD box family, putative; A probable ATP-dependent RNA helicase with RNA-dependent ATPase activity. Involved in regulation of biofilm formation and hemolysis via its effects on stability of mRNA from the agrBDCA operon. Also involved in response to cold stress. | 0.523 |
| dnaK | hfq | SAOUHSC_01683 | SAOUHSC_01281 | DNAk protein, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Host factor 1 protein, putative; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.592 |
| dnaK | pnp | SAOUHSC_01683 | SAOUHSC_01251 | DNAk protein, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Polyribonucleotide nucleotidyltransferase, putative; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.525 |
| dnaK | rnr | SAOUHSC_01683 | SAOUHSC_00803 | DNAk protein, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Ribonuclease R, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.755 |
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