Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABD29988.1Conserved hypothetical protein. (88 aa)    
Predicted Functional Partners:
ABD29989.1
Conserved hypothetical protein.
 
     0.899
ABD30367.1
Conserved hypothetical protein.
  
     0.725
nagD
Conserved hypothetical protein; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro.
       0.722
ABD30669.1
Conserved hypothetical protein.
  
     0.705
ABD30368.1
Conserved hypothetical protein.
  
     0.677
ABD29887.1
Conserved hypothetical protein.
  
     0.642
ABD29991.1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
       0.624
ABD29722.1
Conserved hypothetical protein; Belongs to the UPF0741 family.
  
     0.586
ABD29745.1
Conserved hypothetical protein.
  
     0.554
rpoE
DNA-directed RNA polymerase, delta subunit, putative; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
    0.512
Your Current Organism:
Staphylococcus aureus
NCBI taxonomy Id: 93061
Other names: S. aureus subsp. aureus NCTC 8325, Staphylococcus aureus NCTC 8325, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus subsp. aureus str. NCTC 8325, Staphylococcus aureus subsp. aureus strain NCTC 8325
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