Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABD30599.1Conserved hypothetical phage protein. (99 aa)    
Predicted Functional Partners:
ABD30600.1
Conserved hypothetical phage protein.
       0.631
ABD30601.1
SLT orf 129-like protein.
       0.631
ABD30602.1
SLT orf 488-like protein.
       0.631
ABD30603.1
SLT orf 636-like protein.
       0.631
ABD30604.1
Conserved hypothetical phage protein.
       0.606
ABD30605.1
SLT orf 527-like protein.
       0.606
ABD30606.1
Holin-like protein.
       0.606
ABD30607.1
Phage tail tape meausure protein, TP901 family, core region domain protein.
       0.606
ABD30608.1
Conserved hypothetical phage protein.
       0.590
ABD30609.1
Conserved hypothetical phage protein.
       0.497
Your Current Organism:
Staphylococcus aureus
NCBI taxonomy Id: 93061
Other names: S. aureus subsp. aureus NCTC 8325, Staphylococcus aureus NCTC 8325, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus subsp. aureus str. NCTC 8325, Staphylococcus aureus subsp. aureus strain NCTC 8325
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