Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABD30613.1SLT orf 123-like protein. (133 aa)    
Predicted Functional Partners:
ABD30614.1
SLT orf 110-like protein.
 
     0.962
ABD30611.1
Major tail protein.
 
     0.933
ABD30612.1
Conserved hypothetical phage protein.
       0.811
ABD30619.1
Phage terminase, large subunit, putative.
 
     0.785
ABD30615.1
Conserved hypothetical phage protein.
       0.762
ABD30610.1
Bacteriophage L54a, bacterial Ig-like domain group 2 family protein.
 
     0.760
ABD30617.1
Scaffolding protease; Belongs to the peptidase S14 family.
       0.731
ABD30605.1
SLT orf 527-like protein.
 
     0.715
ABD30606.1
Holin-like protein.
 
     0.700
ABD31229.1
Phi PVL orf 13-like protein.
 
     0.698
Your Current Organism:
Staphylococcus aureus
NCBI taxonomy Id: 93061
Other names: S. aureus subsp. aureus NCTC 8325, Staphylococcus aureus NCTC 8325, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus subsp. aureus str. NCTC 8325, Staphylococcus aureus subsp. aureus strain NCTC 8325
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