Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABD30616.1Conserved hypothetical phage protein. (387 aa)    
Predicted Functional Partners:
ABD30618.1
Phage portal protein, HK97 family.
   
 
 0.852
ABD30619.1
Phage terminase, large subunit, putative.
       0.807
ABD30617.1
Scaffolding protease; Belongs to the peptidase S14 family.
  
    0.783
ABD30620.1
Terminase-small subunit.
       0.767
ABD30612.1
Conserved hypothetical phage protein.
  
    0.602
ABD30615.1
Conserved hypothetical phage protein.
       0.588
ABD30613.1
SLT orf 123-like protein.
       0.570
ABD30614.1
SLT orf 110-like protein.
       0.570
ABD30611.1
Major tail protein.
       0.531
ABD30602.1
SLT orf 488-like protein.
  
   0.498
Your Current Organism:
Staphylococcus aureus
NCBI taxonomy Id: 93061
Other names: S. aureus subsp. aureus NCTC 8325, Staphylococcus aureus NCTC 8325, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus subsp. aureus str. NCTC 8325, Staphylococcus aureus subsp. aureus strain NCTC 8325
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