Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABD30791.1Conserved hypothetical protein. (212 aa)    
Predicted Functional Partners:
ABD30789.1
Conserved hypothetical protein.
 
  
 0.949
ABD30790.1
Conserved hypothetical protein.
  
  
 0.941
udk
Uridine kinase.
  
    0.879
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.801
ABD30793.1
Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.
 
     0.673
ABD30792.1
Conserved hypothetical protein; Belongs to the UPF0473 family.
       0.636
ABD30786.1
Conserved hypothetical protein.
       0.609
ABD30794.1
Conserved hypothetical protein; Belongs to the UPF0297 family.
       0.593
ABD30784.1
acetyl-CoA carboxylase, biotin carboxyl carrier protein, putative.
       0.563
ABD30785.1
Conserved hypothetical protein.
       0.563
Your Current Organism:
Staphylococcus aureus
NCBI taxonomy Id: 93061
Other names: S. aureus subsp. aureus NCTC 8325, Staphylococcus aureus NCTC 8325, Staphylococcus aureus subsp. aureus NCTC 8325, Staphylococcus aureus subsp. aureus str. NCTC 8325, Staphylococcus aureus subsp. aureus strain NCTC 8325
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